Month: January 2018

New publication on mitogenomes

Dong S., J.-Y. Xue, S. Zhang, L. Zhang, H. Wu, Z. Chen, B. Goffinet & Yang Liu. 2018. Complete mitochondrial genome sequence of Anthoceros angustus: conservative evolution of mitogenome in hornworts. The Bryologist 121: 14–22. pdf

Abstract reads: The architecture and composition of the mitochondrial genome of bryophytes is currently considered much more stable and invariant than that of vascular plants. For example, liverworts and mosses appear to have nearly static mitochondrial genomes, whereas neither of two vascular plant mitogenomes sequenced to date share the same gene order. By contrast, the two available mitogenomes of hornworts, Nothoceros aenigmaticus and Phaeoceros laevis, show high consistency in gene content but differ in their gene order. To explore the patterns of hornwort mitogenome structure at a broader phylogenetic breadth and provide insights into plant mitogenome evolution, we assembled the complete mitochondrial genome from a third hornwort species, Anthoceros angustus Steph. Its mitogenome comprises 242,410 base pairs, and encodes 21 protein coding genes, three rRNA genes and 20 tRNA genes, with 38 introns disrupting 16 protein-coding genes, including three newly described introns, making it the most intron-rich plant mitochondrial genome determined to date. A total of ten putatively pseudogenized protein coding genes were found in Anthoceros; eight of them are shared with Nothoceros and Phaeoceros. The genic composition of the Anthoceros mitogenome differs from that of the other two hornworts by only one or two gene insertions or losses. The gene order in the Anthoceros mtDNA differs from that in Phaeoceros and Nothoceros by only one and three events of inversion or translocations, respectively. Overall, hornworts appear to have kept a stable mt genome structure, which could have characterized early land plant mt genome evolution.

New publication on lichens

An assessment of the diversity and relationships of a group of lichenized basidiomycetes, has been completed and resulted in a global circumscription of the Lepidostromatales: Liu D., B. Goffinet, D. Ertz, A. De Kesel, Z.G. Qian, X.Y. Wang, H.X. Shi, Y.Y. Zhang, J.W. Li, X. Ye, J.S. Hur & L.S. Wang. 2017 (2018). Circumscription and phylogeny of the Lepidostromatales (lichenized Basidiomycota) following discovery of new species from China and Africa. Mycologia 109: 730–748. pdf.

Abstract reads: Based on an exhaustive sampling of all known Lepidostromatales, a lineage of clavarioid lichen-forming basidiomycetes, we assess (i) the phylogenetic affinities of the six Chinese species currently accommodated in Multiclavula(Cantharellales) based on inferences from the 18S and 28S subunits of the nuclear ribosomal DNA repeat and (ii) the phylogenetic structure among Chinese populations of Lepidostromatales, based on the nuc rDNA ITS1-5.8S-ITS2 (ITS) regions. Multiclavula fossicola and M. sinensis belong to the Lepidostromatales, and are transferred to Sulzbacheromyces. Chinese reports of M. clara and M. vernalis belong to species of Lepidostromatales and specimens identified as M. mucida belong to the non-lichenized genus Clavaria. Hence, evidence of Multiclavula occurring in China is lacking. Similarly, L. calocerum is excluded from the Chinese flora. The recently described L. asianum should be regarded as conspecific with S. sinensis. Three new species of Sulzbacheromyces are described: S. bicolor and S. yunnanensis from China, and S. miomboensis from the Democratic Republic of Congo. Consequently, Sulzbacheromyces is new to Asia and Africa. A world-wide key to the species of Lepidostromatales is provided.